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Theresa Pollinger
MoSIS
Commits
c4d10f0a
Commit
c4d10f0a
authored
Apr 16, 2018
by
Theresa Pollinger
Browse files
made additional data files installable and executable
parent
3dc6b591
Changes
4
Hide whitespace changes
Inline
Side-by-side
MANIFEST
deleted
100644 → 0
View file @
3dc6b591
include interview_kernel/exastencils/compiler.jar
include interview_kernel/exastencils/generate_compile_and_run_list.sh
recursive-include interview_kernel/exastencils/lib *.*
README.md
View file @
c4d10f0a
...
...
@@ -6,8 +6,7 @@ from this directory, run
```
shell
pip
install
.
python setup.py
install
cd
interview_kernel
python install.py
python
-m
interview_kernel.install
```
## Running
...
...
@@ -18,7 +17,8 @@ You can then run the interview_kernel kernel as a console, notebook, etc.:
jupyter console
--kernel
=
interview_kernel
```
## Dependencies
or
1.
IPython 3
1.
MetaKernel (installed with pip)
```
shell
jupyter notebook
--kernel
=
interview_kernel
```
interview_kernel/exaoutput.py
View file @
c4d10f0a
import
os
from
pathlib
import
Path
from
tempfile
import
gettempdir
import
subprocess
from
collections
import
OrderedDict
from
pylatexenc.latexencode
import
utf8tolatex
,
utf82latex
...
...
@@ -18,7 +19,7 @@ class ExaOutput:
but only if simdata is given"""
def
__init__
(
self
,
simdata
=
None
,
username
=
"user"
,
probname
=
None
):
remove_ensuremaths
()
self
.
exastencils_path
=
Path
(
"./exastencils"
)
self
.
exastencils_path
=
Path
(
os
.
path
.
dirname
(
__file__
)).
joinpath
(
"./exastencils"
)
self
.
username
=
username
...
...
@@ -50,15 +51,19 @@ class ExaOutput:
(
"timeStrategies"
,
True
),
(
"buildfileGenerators"
,
"{
\"
MakefileGenerator
\"
}"
)
])
self
.
tmppath
=
Path
(
gettempdir
())
self
.
dirpath
=
self
.
exastencils_path
.
joinpath
(
self
.
probname
)
self
.
filespath
=
self
.
dirpath
.
joinpath
(
self
.
probname
)
ff
=
str
(
self
.
dirpath
)
if
not
os
.
path
.
exists
(
ff
):
try
:
os
.
makedirs
(
ff
)
except
OSError
as
exc
:
# Guard against race condition
if
exc
.
errno
!=
errno
.
EEXIST
:
raise
ff
=
[
self
.
dirpath
]
# , self.tmppath.joinpath("generated"), self.tmppath.joinpath("Debug")]
for
f
in
ff
:
if
not
os
.
path
.
exists
(
str
(
f
)):
try
:
os
.
makedirs
(
str
(
f
))
except
OSError
as
exc
:
# Guard against race condition
if
exc
.
errno
!=
errno
.
EEXIST
:
raise
# # and link it into the exastencils directory
# os.symlink(str(f), str(self.exastencils_path.joinpath(os.path.basename(os.path.normpath(f)))))
if
simdata
is
not
None
:
self
.
create_settings
()
# self.create_platform()
...
...
@@ -242,7 +247,7 @@ class ExaOutput:
"
\n
"
"
\n
"
"configList=
\"\"
\n
"
\
"configList+=
\"
{}/{}
\"
\n
"
.
format
(
self
.
probname
,
self
.
probname
))
"configList+=
\"
{}/{}
\"
\n
"
.
format
(
self
.
probname
,
self
.
probname
))
#(self.dirpath, self.probname))
class
ExaRunner
:
"""A class to run exastencils using the files generated by an Exaoutput class, and to get the results"""
...
...
@@ -253,6 +258,7 @@ class ExaRunner:
self
.
exaout
=
exaout
def
run_exastencils
(
self
):
# print(str(os.path.abspath(self.exaout.exastencils_path)))
p
=
subprocess
.
run
([
"./generate_compile_and_run_list.sh"
],
cwd
=
str
(
self
.
exaout
.
exastencils_path
),
stdin
=
subprocess
.
PIPE
,
stdout
=
subprocess
.
PIPE
,
stderr
=
subprocess
.
STDOUT
)
out
=
p
.
stdout
...
...
setup.py
View file @
c4d10f0a
...
...
@@ -20,12 +20,15 @@ setup(
# replicating contents of MANIFEST,
# cf.https://stackoverflow.com/questions/7522250/how-to-include-package-data-with-setuptools-distribute/14159430#14159430
package_data
=
{
'interview_kernel'
:
[
'
interview_kernel/
exastencils/compiler.jar'
,
'interview_kernel/
exastencils/generate_compile_and_run_list.sh'
,
'interview_kernel/
exastencils/lib/*.*'
],
'interview_kernel'
:
[
'exastencils/compiler.jar'
,
'
exastencils/generate_compile_and_run_list.sh'
,
'
exastencils/lib/*.*'
],
},
# data_files=[
# ],
zip_safe
=
False
,
# use_scm_version=True,
setup_requires
=
[
'setuptools_scm'
],
# or possibly https://pypi.python.org/pypi/setuptools-git
install_requires
=
[
'transitions'
,
'bokeh'
,
'requests'
,
'pylatexenc'
,
'metakernel'
,
'lxml'
,
'IPython'
,
'jupyter_client'
,
'ipywidgets'
]
install_requires
=
[
'transitions'
,
'bokeh'
,
'pandas'
,
'requests'
,
'pylatexenc'
,
'metakernel'
,
'lxml'
,
'IPython'
,
'jupyter_client'
,
'ipywidgets'
]
)
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