made additional data files installable and executable

MANIFEST

-include interview_kernel/exastencils/compiler.jar
-include interview_kernel/exastencils/generate_compile_and_run_list.sh
-recursive-include interview_kernel/exastencils/lib *.*

README.md

@@ -6,8 +6,7 @@ from this directory, run
 ```shell
 pip install .
 python setup.py install
-cd interview_kernel
-python install.py
+python -m interview_kernel.install
 ```
 
 ## Running
@@ -18,7 +17,8 @@ You can then run the interview_kernel kernel as a console, notebook, etc.:
 jupyter console --kernel=interview_kernel
 ```
 
-## Dependencies
+or 
 
-1. IPython 3
-1. MetaKernel (installed with pip)
+```shell
+jupyter notebook --kernel=interview_kernel
+```

interview_kernel/exaoutput.py

 
 import os
 from pathlib import Path
+from tempfile import gettempdir
 import subprocess
 from collections import OrderedDict
 from pylatexenc.latexencode import utf8tolatex, utf82latex
@@ -18,7 +19,7 @@ class ExaOutput:
         but only if simdata is given"""
     def __init__(self, simdata=None, username="user", probname=None):
         remove_ensuremaths()
-        self.exastencils_path = Path("./exastencils")
+        self.exastencils_path = Path(os.path.dirname(__file__)).joinpath("./exastencils")
 
         self.username = username
 
@@ -50,15 +51,19 @@ class ExaOutput:
             ("timeStrategies", True),
             ("buildfileGenerators", "{ \"MakefileGenerator\" }")
         ])
+        self.tmppath = Path(gettempdir())
         self.dirpath = self.exastencils_path.joinpath(self.probname)
         self.filespath = self.dirpath.joinpath(self.probname)
-        ff = str(self.dirpath)
-        if not os.path.exists(ff):
-            try:
-                os.makedirs(ff)
-            except OSError as exc:# Guard against race condition
-                if exc.errno != errno.EEXIST:
-                    raise
+        ff = [self.dirpath]  # , self.tmppath.joinpath("generated"), self.tmppath.joinpath("Debug")]
+        for f in ff:
+            if not os.path.exists(str(f)):
+                try:
+                    os.makedirs(str(f))
+                except OSError as exc:# Guard against race condition
+                    if exc.errno != errno.EEXIST:
+                        raise
+            # # and link it into the exastencils directory
+            # os.symlink(str(f), str(self.exastencils_path.joinpath(os.path.basename(os.path.normpath(f)))))
         if simdata is not None:
             self.create_settings()
     #        self.create_platform()
@@ -242,7 +247,7 @@ class ExaOutput:
                 "\n"
                 "\n"
                 "configList=\"\" \n"\
-                "configList+=\"{}/{} \" \n".format(self.probname, self.probname))
+                "configList+=\"{}/{} \" \n".format(self.probname, self.probname)) #(self.dirpath, self.probname))
 
 class ExaRunner:
     """A class to run exastencils using the files generated by an Exaoutput class, and to get the results"""
@@ -253,6 +258,7 @@ class ExaRunner:
         self.exaout = exaout
 
     def run_exastencils(self):
+        # print(str(os.path.abspath(self.exaout.exastencils_path)))
         p = subprocess.run(["./generate_compile_and_run_list.sh"], cwd=str(self.exaout.exastencils_path),
                            stdin=subprocess.PIPE, stdout=subprocess.PIPE, stderr=subprocess.STDOUT)
         out = p.stdout

setup.py

@@ -20,12 +20,15 @@ setup(
     # replicating contents of MANIFEST,
     # cf.https://stackoverflow.com/questions/7522250/how-to-include-package-data-with-setuptools-distribute/14159430#14159430
     package_data={
-        'interview_kernel': ['interview_kernel/exastencils/compiler.jar',
-                                            'interview_kernel/exastencils/generate_compile_and_run_list.sh',
-                                            'interview_kernel/exastencils/lib/*.*'],
+        'interview_kernel': ['exastencils/compiler.jar',
+                             'exastencils/generate_compile_and_run_list.sh',
+                             'exastencils/lib/*.*'],
     },
+#    data_files=[
+#    ],
     zip_safe=False,
     # use_scm_version=True,
     setup_requires=['setuptools_scm'],  # or possibly https://pypi.python.org/pypi/setuptools-git
-    install_requires=['transitions', 'bokeh', 'requests', 'pylatexenc', 'metakernel', 'lxml', 'IPython', 'jupyter_client', 'ipywidgets']
+    install_requires=['transitions', 'bokeh', 'pandas', 'requests', 'pylatexenc', 'metakernel', 'lxml',
+                      'IPython', 'jupyter_client', 'ipywidgets']
 )